pepWarp
Copyright Notice
pepWarp is Copyright (C) 2001- Magnus Palmblad and Jeroen de Bruin
pepWarp is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License as
published by the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for
more details.
You should have received a copy of the GNU General Public
License along with this program; if not, write to the Free Software Foundation,
Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
About pepWarp
pepWarp warps the retention times or scan numbers in a pepXML file based on a chromatographic alignment with another dataset. This version of pepWarp is primarily meant
for inclusion and use with scientific workflow managers such as Taverna.
Download pepWarp here. (Right-click and choose "Save Link As...".)
Compiling pepWarp
Compile pepWarp with: gcc -O3 -o pepWarp pepWarp.c -lm
Using pepWarp
Usage: pepWarp -p <pepXML file to be warped> -m <LC-MS data in mzXML> -f <msAlign/pepAlign PLF file> [-o <output file>]
Either the times or the scan numbers are warped, depending on the PLF file.
magnus.palmblad@gmail.com